rs27109097 SNP Detail

Summary

• ID
  rs27109097
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:5855961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGGTTGA CTTCTGGCAT
  CCCCACACAT TGTACATATG CATGAATGTG TGCCATAGCC ACACACGGGC TTGTATACAT
  TCCACACAAA GACTTACATG GCCCTACTCA GTTTCTTTCA AAGAGCCTTG GTCTCTCTGT
  CGATTATAGA GCTGTCCCTA CTGCCTTTCC ATCAGTCAGG GCTTTGCTGG TGGTTTAAAC
  K
  TCTATGTCTT TTTTTCCTTT TTCTTTGAAC TGTAGTCACA CCATATTATC CCCGCTGGTC
  TCAAAGTGTC AGCCTCCCAA ATCGCTAGGA CTGTAGGCAT GCGCCGTCCA TCATACTTGG
  CAAAGTTCTA CTTCTGAAAC ACCATGAGCA TTGAGCAAGA CCGCTGGCAT TACTCAGATC
  TTATCAAGAG AATGAGCGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37320326	NES08845038	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	T	G	G	G	G		G	G	T	G
ss146275384	ENSMUSSNP2276209	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27109097					SNP	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37320326	NES08845038	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:5855961 () rs orientation: forward

Symbol	Name	Function Class
Nudt5	nudix hydrolase 5	within coordinates
Rr49685	regulatory region 49685	1640 bp proximal
Tssr16009	transcription start site region 16009	1695 bp upstream