rs27113030 SNP Detail

Summary

• ID
  rs27113030
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3812600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCTATAG AATTTAGCCA
  CCAATAAATA TTAGAGTTTA ATATTTAAAA GAAGGCATTG AGGAGGACCT GAGTGCTGAA
  GGCTGACCTT TCTGAAGCAG AGTTTGGGTG ACTGCAAGGA TGAGTTATTG CATTAGCCTT
  TGGGTGTCCA GTGTCAGGTG TCCAGAAAGT CTTCTGGGAG ATGTGAGTTA GCTACAGAAG
  S
  GCAAAGCCAG GAAGGAAGGG CACAGAACTG GGATAGAAGA AGGAAAAGGA AGTTGTTTTT
  TTTTTTTTTT TTTTTTTTTG GGACTGTATC AAATAACCCA GTTTCCTGAC CTCAGCCCCA
  GTTTTCTTTC TGCAACAGGA TATGGAAGCA GAGCAAGGGT CTGATCACAT TTCTCATTGA
  CTTTGGGAGC CCATTGATCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	NOD/ShiLtJ	PWD/PhJ
ss37327364	NES08845114	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	NOD/ShiLtJ	PWD/PhJ
rs27113030					SNP	C	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37327364	NES08845114	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3812600 () rs orientation: forward

Symbol	Name	Function Class
Gm13180	predicted gene 13180	within coordinates
Gm36031	predicted gene, 36031	within coordinates
Rr550967	regulatory region 550967	822 bp distal
Tssr15925	transcription start site region 15925	1353 bp downstream