rs27113031 SNP Detail

Summary

• ID
  rs27113031
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3812511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATAGTAAA TGATCATTTA
  AGTTAGGTGT TGACTGCTTC CTGCTGCCTG TTCGAGTAAA AACGGAGCTG TCCAGTGTGG
  AGAGCAGTTT CTGCTATAGA ATTTAGCCAC CAATAAATAT TAGAGTTTAA TATTTAAAAG
  AAGGCATTGA GGAGGACCTG AGTGCTGAAG GCTGACCTTT CTGAAGCAGA GTTTGGGTGA
  Y
  TGCAAGGATG AGTTATTGCA TTAGCCTTTG GGTGTCCAGT GTCAGGTGTC CAGAAAGTCT
  TCTGGGAGAT GTGAGTTAGC TACAGAAGCG CAAAGCCAGG AAGGAAGGGC ACAGAACTGG
  GATAGAAGAA GGAAAAGGAA GTTGTTTTTT TTTTTTTTTT TTTTTTTTGG GACTGTATCA
  AATAACCCAG TTTCCTGACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	PWD/PhJ
ss37327365	NES08845113	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	PWD/PhJ
rs27113031					SNP	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37327365	NES08845113	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3812511 () rs orientation: forward

Symbol	Name	Function Class
Gm13180	predicted gene 13180	within coordinates
Gm36031	predicted gene, 36031	within coordinates
Rr550967	regulatory region 550967	733 bp distal
Tssr15925	transcription start site region 15925	1264 bp downstream