rs27113032 SNP Detail

Summary

• ID
  rs27113032
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3809763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGAAGTA AAAAATATTC
  ATCACTGGCA AACTGAACAT AATATCTATT TTCCTGTAAC AACCTTCTAT TCTTAGATGC
  CACAAAAAAG AAACACTCTC AAATGGAAAA CAATATGTCC TATATTCTTA CTATGTTACA
  GTTGCTAAAG ATTGCTAACA CGTGCCTAGG ATGCCCACAA GGGCAAGAGA CATCCCTAAA
  W
  TTTTTTCAGA TTGATAAAAG AATCTTGTGA GGTATGCACT AAGTGAGGTC ATAATTCAAT
  TGGCAACATT TCTCACTTGG TGAGAATATA GGACACACTT TTTTCCAGAC AATGGGATGT
  GATTGACCAC TTACATGAGT TACAAATGTT AGAAGACAGA GAGGAGTTTT GAATGTGTGT
  TATCAGATGA GAGGAACCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37327366	NES08845141	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27113032					SNP	A	A	A	A	A	T	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37327366	NES08845141	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3809763 () rs orientation: forward

Symbol	Name	Function Class
Gm13180	predicted gene 13180	within coordinates
Gm36031	predicted gene, 36031	within coordinates
Rr550967	regulatory region 550967	1671 bp proximal
Tssr15925	transcription start site region 15925	1469 bp upstream