rs27115710 SNP Detail

Summary

• ID
  rs27115710
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:11712897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATGAGGGG GGTGGGGAGG
  GAGGGAGAAA GAGAGAGAGA GGCTCAAACA ATATGGCAGG TGAAAAATGA TTCCCTACTC
  CCTTCCCCCA GTGCTGGGAT TATGGGATGT GTGTGCATCC ATACCCAGCT AAACTATGAC
  TTATTTTTAG ATCTGTGAAT CAGCATTAGT TGCCTCCTGA TTGTTGGGTA TTTAAGTTGT
  Y
  TCAGTATGGT AGTATTTAAG AGGCAACATG TTGGGAATCT GTATTCTTTA TCCTCCTCTC
  CCTCCTCCTC CTCCTCCTCT TCCTCCTCCC TCTCCTTCTT TCCTTGAGAT AGGGTCTTAC
  TGTGTAGCAC TGGCTGGCTT GGAACTCTAT GTAGACCAGG CTGTCCATGA CAGATATCTG
  CCTCCCAAGT GTGTGCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37336339	NES08809899	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27115710					SNP	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37336339	NES08809899	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:11712897 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11206	CpG island 11206			1800 bp distal
Il15ra	interleukin 15 receptor, alpha chain			Intron
				Noncoding-Transcript-Variant
Rr551845	regulatory region 551845			1139 bp distal
Rr551846	regulatory region 551846			343 bp proximal