rs27115716 SNP Detail

Summary

• ID
  rs27115716
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:11711483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACAAACA AACAAAAACC
  ACGTGTGGAG CAGGCAGGTT GCGCATCTGA ACGCTACAAA ACAGGTCCAG GTTCTCAAGC
  GCACTGGCAA CTTGGGGCCC GGACGATTGG AGAGGAGGAG AGACTGTTTT CCCATGGAAG
  AAGGGGTGTC ACATGTTCCA GAATGTGTCG TCTAGATCTA ATCTCGGGAA GAATGAATTG
  M
  GACTCCTAGT TTTGTTCCAA TAGGTCTAGA AGGAAAGAGC GAGAACAGTT GGGTCTAGCA
  ACGTCCGGAC CCAGGATGTC GCATCTTTTT ATAAACATGA AATTCTTCAG AGTCTGTTAA
  AAAAATCTAC GTACTCCCTG CACAGAAATG TGTGTGAAAG CACATGCTTG CAAATGTGCA
  CAGGATTTGG GGACCGAGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37336345	NES08809933	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27115716					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37336345	NES08809933	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:11711483 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11206	CpG island 11206			386 bp distal
Il15ra	interleukin 15 receptor, alpha chain			Intron
				Noncoding-Transcript-Variant
Rr551843	regulatory region 551843			814 bp distal
Rr551844	regulatory region 551844			1466 bp distal
Rr551845	regulatory region 551845			within coordinates
Rr551846	regulatory region 551846			1757 bp proximal
Tssr16154	transcription start site region 16154			1326 bp downstream
Tssr16155	transcription start site region 16155			1297 bp downstream
Tssr16156	transcription start site region 16156			1271 bp downstream
Tssr16157	transcription start site region 16157			1224 bp downstream
Tssr16158	transcription start site region 16158			1208 bp downstream
Tssr16159	transcription start site region 16159			905 bp downstream
Tssr16160	transcription start site region 16160			840 bp downstream