rs27117179 SNP Detail

Summary

• ID
  rs27117179
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:10375943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGAATTC TCTAAAATGT
  GAAGGAAATA TTCTCAGACT GGCAGGGCTC AGTCTTTTGT AACTTCCACC ACGCTTTCCG
  AATCTCTGAC TTTCGCCCAC CATTCCCTCC CACCCCCCAC CCCTGAGGCC CAATAATGGC
  GAGAGCCATT TCTGCGCTTC TCCCTTCTAG ATTCTTCCAG ATGACCTAAA GCCTCATAGT
  Y
  GGTGATGTCT CCCGCGCAAA GTTAGCCTCT GGCCCCGTCA CTCTATTGGC GGTTCCTAGC
  CCTCACCACT CCCTAGGGAA CCACGTGTGG GAATTTCGCT GGGATGTTAG GATCAGGGAG
  GGTGACTAAA AATCTCAGTA TGTAGTTGTT TTTTCGGAGA GTGGTGTAAG GGATAGGTGG
  GCAATAGAAG ACTACGGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37340009	NES08827794	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27117179					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37340009	NES08827794	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:10375943 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11193	CpG island 11193	389 bp proximal
Cpgi11194	CpG island 11194	1052 bp proximal
Gm74532	predicted gene, 74532	708 bp downstream
Sfmbt2	Scm-like with four mbt domains 2	within coordinates
Tssr16083	transcription start site region 16083	615 bp downstream
Tssr16084	transcription start site region 16084	133 bp upstream
Tssr16085	transcription start site region 16085	219 bp upstream
Tssr16086	transcription start site region 16086	477 bp upstream
Tssr16087	transcription start site region 16087	1204 bp upstream
Tssr16088	transcription start site region 16088	1294 bp upstream
Tssr16089	transcription start site region 16089	1419 bp upstream