rs27117180 SNP Detail

Summary

• ID
  rs27117180
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:10375801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTCGGGA GTGGCAAACT
  CCGGCGGGTG ATAAAAGTGT GAACCTCAGA GAATACTGAT AAGCGAATGA CTGGGGCCTT
  CAGGGTCTTA GATGGCTCTG TACTAAACGG AGGTGTATGG GCAAGGCGAG ACGCTTTAGA
  GCTAAAGAAT TCTCTAAAAT GTGAAGGAAA TATTCTCAGA CTGGCAGGGC TCAGTCTTTT
  K
  TAACTTCCAC CACGCTTTCC GAATCTCTGA CTTTCGCCCA CCATTCCCTC CCACCCCCCA
  CCCCTGAGGC CCAATAATGG CGAGAGCCAT TTCTGCGCTT CTCCCTTCTA GATTCTTCCA
  GATGACCTAA AGCCTCATAG TTGGTGATGT CTCCCGCGCA AAGTTAGCCT CTGGCCCCGT
  CACTCTATTG GCGGTTCCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37340010	NES08827793	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27117180					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37340010	NES08827793	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:10375801 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11193	CpG island 11193	531 bp proximal
Cpgi11194	CpG island 11194	1194 bp proximal
Gm74532	predicted gene, 74532	850 bp downstream
Rr551679	regulatory region 551679	469 bp distal
Rr551680	regulatory region 551680	45 bp distal
Rr551681	regulatory region 551681	956 bp proximal
Rr551682	regulatory region 551682	1471 bp proximal
Rr551683	regulatory region 551683	1532 bp proximal
Rr551684	regulatory region 551684	1673 bp proximal
Sfmbt2	Scm-like with four mbt domains 2	within coordinates
Tssr16083	transcription start site region 16083	473 bp downstream
Tssr16084	transcription start site region 16084	275 bp upstream
Tssr16085	transcription start site region 16085	361 bp upstream
Tssr16086	transcription start site region 16086	619 bp upstream
Tssr16087	transcription start site region 16087	1346 bp upstream
Tssr16088	transcription start site region 16088	1436 bp upstream
Tssr16089	transcription start site region 16089	1561 bp upstream