rs27117181 SNP Detail

Summary

• ID
  rs27117181
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:10375687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGACGGGA TTAATTTATT
  TTTGAGAAGT TTCTGCCGTC AGGAGTCTCC GACCTTAAGG ATGATGAGCT CAAAAAATAC
  ATTGGTGTTC CTAAGAGTTG GACACCGGGA AGCTAGCTTC GGGAGTGGCA AACTCCGGCG
  GGTGATAAAA GTGTGAACCT CAGAGAATAC TGATAAGCGA ATGACTGGGG CCTTCAGGGT
  Y
  TTAGATGGCT CTGTACTAAA CGGAGGTGTA TGGGCAAGGC GAGACGCTTT AGAGCTAAAG
  AATTCTCTAA AATGTGAAGG AAATATTCTC AGACTGGCAG GGCTCAGTCT TTTGTAACTT
  CCACCACGCT TTCCGAATCT CTGACTTTCG CCCACCATTC CCTCCCACCC CCCACCCCTG
  AGGCCCAATA ATGGCGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37340011	NES08827792	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T		C	C	C
ss146291620	ENSMUSSNP842413	ENSEMBL	ENSEMBL_Sanger	f	SNP												T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27117181					SNP	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37340011	NES08827792	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:10375687 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11193	CpG island 11193	645 bp proximal
Cpgi11194	CpG island 11194	1308 bp proximal
Gm74532	predicted gene, 74532	964 bp downstream
Rr551679	regulatory region 551679	355 bp distal
Rr551680	regulatory region 551680	within coordinates
Rr551681	regulatory region 551681	1070 bp proximal
Rr551682	regulatory region 551682	1585 bp proximal
Rr551683	regulatory region 551683	1646 bp proximal
Rr551684	regulatory region 551684	1787 bp proximal
Sfmbt2	Scm-like with four mbt domains 2	within coordinates
Tssr16083	transcription start site region 16083	359 bp downstream
Tssr16084	transcription start site region 16084	389 bp upstream
Tssr16085	transcription start site region 16085	475 bp upstream
Tssr16086	transcription start site region 16086	733 bp upstream
Tssr16087	transcription start site region 16087	1460 bp upstream
Tssr16088	transcription start site region 16088	1550 bp upstream
Tssr16089	transcription start site region 16089	1675 bp upstream