rs27117182 SNP Detail

Summary

• ID
  rs27117182
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:10375640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAATAAAA GAAGCAGTTG
  CGGGTGTAGA TGGGATGAAT AATGTTCAGG GACGGGATTA ATTTATTTTT GAGAAGTTTC
  TGCCGTCAGG AGTCTCCGAC CTTAAGGATG ATGAGCTCAA AAAATACATT GGTGTTCCTA
  AGAGTTGGAC ACCGGGAAGC TAGCTTCGGG AGTGGCAAAC TCCGGCGGGT GATAAAAGTG
  Y
  GAACCTCAGA GAATACTGAT AAGCGAATGA CTGGGGCCTT CAGGGTCTTA GATGGCTCTG
  TACTAAACGG AGGTGTATGG GCAAGGCGAG ACGCTTTAGA GCTAAAGAAT TCTCTAAAAT
  GTGAAGGAAA TATTCTCAGA CTGGCAGGGC TCAGTCTTTT GTAACTTCCA CCACGCTTTC
  CGAATCTCTG ACTTTCGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37340012	NES08827791	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27117182					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37340012	NES08827791	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:10375640 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11193	CpG island 11193	692 bp proximal
Cpgi11194	CpG island 11194	1355 bp proximal
Gm74532	predicted gene, 74532	1011 bp downstream
Rr551679	regulatory region 551679	308 bp distal
Rr551680	regulatory region 551680	within coordinates
Rr551681	regulatory region 551681	1117 bp proximal
Rr551682	regulatory region 551682	1632 bp proximal
Rr551683	regulatory region 551683	1693 bp proximal
Rr551684	regulatory region 551684	1834 bp proximal
Sfmbt2	Scm-like with four mbt domains 2	within coordinates
Tssr16083	transcription start site region 16083	312 bp downstream
Tssr16084	transcription start site region 16084	436 bp upstream
Tssr16085	transcription start site region 16085	522 bp upstream
Tssr16086	transcription start site region 16086	780 bp upstream
Tssr16087	transcription start site region 16087	1507 bp upstream
Tssr16088	transcription start site region 16088	1597 bp upstream
Tssr16089	transcription start site region 16089	1722 bp upstream