rs27117184 SNP Detail

Summary

• ID
  rs27117184
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:10374536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCACACA TCCCTAAAGG
  GTCTGGTTGT GAAATGAAAG TGGAAATTAG ACGGCATTGG AACGGGACGA AGGAGTACCT
  TTAACTTCGG AGGGAACCTG CTAGCCACTT TTCATTGCCT TTTGGGTGCC CTGGGATAAA
  AGTGGGAGGT GGGTTAAAAA GAAACAAAAA ACAAAACAAC AACAGCAGCA GGAGCAACGA
  Y
  CACAAAGAAA AGCCAAAGGA CATAAGAAAA GCCATGTGCC AAGAGTGAAT TAAAAGTAAA
  GGATATTGAA CTTGGAGACC GTTTGCTGTA GACATCATTG GAGTAATTTG TGTAAACAGT
  GCGGCCACTA CGTGCAGTGA CAGCGCAATG TTTTTTATTT CTTAATCATG ACAGGTAGAT
  AGATAAATAC ACAAATGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37340014	NES08827789	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27117184					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37340014	NES08827789	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:10374536 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11193	CpG island 11193	1796 bp proximal
Rr551679	regulatory region 551679	408 bp proximal
Rr551680	regulatory region 551680	797 bp proximal
Sfmbt2	Scm-like with four mbt domains 2	785 bp upstream
Tssr16083	transcription start site region 16083	769 bp upstream
Tssr16084	transcription start site region 16084	1540 bp upstream
Tssr16085	transcription start site region 16085	1626 bp upstream
Tssr16086	transcription start site region 16086	1884 bp upstream