rs27117186 SNP Detail

Summary

• ID
  rs27117186
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:10374386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTTGGCAG TGGTTACTGT TTTATTGATT TGGAGTGGGT
  CCCGCATTTG GAGTCACACA TCCCTAAAGG GTCTGGTTGT GAAATGAAAG TGGAAATTAG
  R
  CGGCATTGGA ACGGGACGAA GGAGTACCTT TAACTTCGGA GGGAACCTGC TAGCCACTTT
  TCATTGCCTT TTGGGTGCCC TGGGATAAAA GTGGGAGGTG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37340016	NES08827787	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27117186					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37340016	NES08827787	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:10374386 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11193	CpG island 11193	1946 bp proximal
Rr551679	regulatory region 551679	558 bp proximal
Rr551680	regulatory region 551680	947 bp proximal
Sfmbt2	Scm-like with four mbt domains 2	935 bp upstream
Tssr16083	transcription start site region 16083	919 bp upstream
Tssr16084	transcription start site region 16084	1690 bp upstream
Tssr16085	transcription start site region 16085	1776 bp upstream