rs27117187 SNP Detail

Summary

• ID
  rs27117187
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:10374338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTTGAAG GGAGATTTTT
  CAGAAAGTGT TAATTATTTT TTAGTGAATC ACTTAGTACT ATTAATCGTG AGACTGAACA
  TGACTTCTCC TGAGTTGGAG TGCATTTTGT CTTTGGAAAG GCAGTCTCTG CTTTCTCTAC
  TTCTTTATTT CTTGGCAGTG GTTACTGTTT TATTGATTTG GAGTGGGTCC CGCATTTGGA
  S
  TCACACATCC CTAAAGGGTC TGGTTGTGAA ATGAAAGTGG AAATTAGACG GCATTGGAAC
  GGGACGAAGG AGTACCTTTA ACTTCGGAGG GAACCTGCTA GCCACTTTTC ATTGCCTTTT
  GGGTGCCCTG GGATAAAAGT GGGAGGTGGG TTAAAAAGAA ACAAAAAACA AAACAACAAC
  AGCAGCAGGA GCAACGATCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37340017	NES08827786	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27117187					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37340017	NES08827786	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:10374338 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11193	CpG island 11193	1994 bp proximal
Rr551679	regulatory region 551679	606 bp proximal
Rr551680	regulatory region 551680	995 bp proximal
Sfmbt2	Scm-like with four mbt domains 2	983 bp upstream
Tssr16083	transcription start site region 16083	967 bp upstream
Tssr16084	transcription start site region 16084	1738 bp upstream
Tssr16085	transcription start site region 16085	1824 bp upstream