rs27117614 SNP Detail

Summary

• ID
  rs27117614
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:9384934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACAT ACCTTTCACT CCAAGGAAAC
  S
  CAATACAGGA GTTATTTTGT GAGAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37343535	NES08820333	PERLEGEN	MM_PANEL2	f	SNP	G		C	G	G	G	G		G	C	G		G	C		G
ss45336962	mCV23176961	ABI	CRAMUS_MOUSE	f	SNP		G	C					G
ss320216156	CHEV_2_9301750	CHEVERUD	SCREENING_POP	f	SNP												C			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27117614					SNP	G	G	C	G	G	G	G	G	G	C	G	C	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37343535	NES08820333	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:9384934 () rs orientation: forward

Symbol	Name	Function Class
Gm13219	predicted gene 13219	within coordinates
Rr508	regulatory region 508	within coordinates
Tssr16055	transcription start site region 16055	1862 bp downstream