rs27117620 SNP Detail

Summary

• ID
  rs27117620
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:9384666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATAACGA ATAAATGCAA
  AACCAGTAAG TCTGTTTGCA TGATGCACAA AGAGACTATT GCTGAATCTA TTTTTTTTTC
  TCTCTCTCTT GGAAAGAACA GAGTCTACTG TACAGGAACA CTAAGCTCTG GGACAAAGCC
  AAAAGACTCT CGAGACTGAA ACTTGGAGTG TGTAGCCTCA TCCCTCCAGG ATCCATAATG
  R
  AACTATGAAT GTAGCACAAG CAGAGAAGAG TATCCGCTAA CATTGTATAG TTGAAACCAC
  TGCAAACACG AGACCTACAG TGGAGAGCAA GTGGCTGCAC TTTCTGGATA AACTGAGATC
  TTGGAAATTT TTTTCATTTA GTTAGCCATC AAAGCAGAAG TCAGCCGCAG AATATATCAG
  TAGTGCAGAG ACAGAACAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37343541	NES08820327	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27117620					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37343541	NES08820327	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:9384666 () rs orientation: forward

Symbol	Name	Function Class
Gm13219	predicted gene 13219	within coordinates
Gm75238	predicted gene, 75238	1892 bp upstream
Rr508	regulatory region 508	within coordinates
Tssr16055	transcription start site region 16055	1594 bp downstream
Tssr22534	transcription start site region 22534	1891 bp upstream