rs27117621 SNP Detail

Summary

• ID
  rs27117621
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:9384648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATGCCCA GGTACACTAA
  GATAACGAAT AAATGCAAAA CCAGTAAGTC TGTTTGCATG ATGCACAAAG AGACTATTGC
  TGAATCTATT TTTTTTTCTC TCTCTCTTGG AAAGAACAGA GTCTACTGTA CAGGAACACT
  AAGCTCTGGG ACAAAGCCAA AAGACTCTCG AGACTGAAAC TTGGAGTGTG TAGCCTCATC
  Y
  CTCCAGGATC CATAATGAAA CTATGAATGT AGCACAAGCA GAGAAGAGTA TCCGCTAACA
  TTGTATAGTT GAAACCACTG CAAACACGAG ACCTACAGTG GAGAGCAAGT GGCTGCACTT
  TCTGGATAAA CTGAGATCTT GGAAATTTTT TTCATTTAGT TAGCCATCAA AGCAGAAGTC
  AGCCGCAGAA TATATCAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37343542	NES08820326	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27117621					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37343542	NES08820326	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:9384648 () rs orientation: forward

Symbol	Name	Function Class
Gm13219	predicted gene 13219	within coordinates
Gm75238	predicted gene, 75238	1874 bp upstream
Rr508	regulatory region 508	within coordinates
Tssr16055	transcription start site region 16055	1576 bp downstream
Tssr22534	transcription start site region 22534	1873 bp upstream