rs27117622 SNP Detail

Summary

• ID
  rs27117622
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:9384570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTC TCTCTTGGAA AGAACAGAGT
  Y
  TACTGTACAG GAACACTAAG CTCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37343543	NES08820325	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C		C	C	T	C		C	C	T	C		C
ss45211633	mCV23176698	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		C
ss146287094	ENSMUSSNP1319924	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							C
ss320216154	CHEV_2_9301386	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27117622					SNP	C	C	T	C	C	C	C	C	C	C	T	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37343543	NES08820325	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:9384570 () rs orientation: forward

Symbol	Name	Function Class
Gm13219	predicted gene 13219	within coordinates
Gm75238	predicted gene, 75238	1796 bp upstream
Rr508	regulatory region 508	within coordinates
Tssr16055	transcription start site region 16055	1498 bp downstream
Tssr22534	transcription start site region 22534	1795 bp upstream