rs27117628 SNP Detail

Summary

• ID
  rs27117628
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:9382226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGCAGTTA TCCGGCAGGT
  TGATTGTTGT AGGCATTGAA TTAAAAAATA GATGTCAAAA AATTATCAGT GATCCCCAGC
  ATGTTGTAAA CTTTCAATAA GTATTAACCC TATTAGTGCT CATATTATTA TTACTATTGT
  CAAAATCATC AGCCCTGATT TAAAACACAA AATCAAAATA GCATATCAGT TGAAGCTCAC
  R
  TCTGCAAGAT GATGGAGGTC ACCTTGAAGG TGACTAAAAG TCCTTTAAGT CTCTTTTGCA
  AGGTCCTTAC TACCGGATAA TTAAATCATA TCTAAAACAC TGCCTTCCTT ACAAAATGAG
  AACATTTTGC CGTACTCTAT TCTAGCAAAG AATCTAGAAA AATTAATCTA TGCATGTCAC
  CTAACACAAT CCAGTCCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37343549	NES08820392	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27117628					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37343549	NES08820392	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:9382226 () rs orientation: forward

Symbol	Name	Function Class
Gm13219	predicted gene 13219	within coordinates
Gm75238	predicted gene, 75238	192 bp downstream
Rr508	regulatory region 508	within coordinates
Tssr16054	transcription start site region 16054	1090 bp downstream
Tssr16055	transcription start site region 16055	826 bp upstream
Tssr22533	transcription start site region 22533	1478 bp upstream
Tssr22534	transcription start site region 22534	538 bp downstream