rs27119158 SNP Detail

Summary

• ID
  rs27119158
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:22035751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCAGGAA AGTAAAGAGG
  TACTTAGACC TGACAGTCAG ACAGTGGAGA GGATTAAGTT CAAATGTTCT TCAGCAAAAT
  TCGGTGGTGA CTGGAAATAA ACAAAACATT GTGTATTTTA AAGTAGCTAA AAGAAAAGAT
  TTTTAATGTT CTCAGTGTAA AGAAAAGATT GGGGTTTCAG GTAATGAATA TGCTAATTAT
  Y
  CTGACTTGAT GGCTCTGCAT CATTTCCATG TGTAGAAAAG CCACTGTGCA TATCATGAGT
  ATGTATTAAG TATCAATTAA TGAAAGAGCC TAATTGTCAA CTATTATTTT GCACAATTTG
  GTTTTTTTTT TTAATTTGCT TTTATTTTAA TGTGACTAAT TAATTGGTGA CTTCCCAGCC
  TCTCACTGGT GGACTTGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37355580	NES08787295	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27119158					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37355580	NES08787295	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:22035751 () rs orientation: forward

Symbol	Name	Function Class
Rr552732	regulatory region 552732	863 bp distal