rs27119169 SNP Detail

Summary

• ID
  rs27119169
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:22034034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACATATTA TCCCTCTTTG
  GGTAAAGAAC AGATTTTGAA TTCTGATGCT GCTGCAGAAG TATTTTTCAC AAGCTTAGTA
  AGGGGTTGTT TGGCTTTGCT GTGCAATAGG AATCTTCAGT GGAGAGTGCT GTGAACAATG
  AAAACAACCA GCTATAGCCT AATAAAGCAG AAAACACTGG CCCACTCATC AGGGCCTCCA
  S
  CAGCCATTTC TGAGGATGTC GGGTATGCTT TGTTAGATTC ACAGCCAGAG ACACACTAAG
  CTTGGATTCT GTTTGAATGC AGAGGGGCTG TGTCCAGGAG GCTTCCTGAG AGAGGGTGTA
  TCTTGCTTTT TGTTTTCACA AAATAAAAAT AACAGAAATG TTTCAGCCAC ATTCAGAGGC
  TGGAGAGAAC CGTCCGTTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37355591	NES08787284	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27119169					SNP	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37355591	NES08787284	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:22034034 () rs orientation: forward

Symbol	Name	Function Class
Rr552731	regulatory region 552731	487 bp distal
Rr552732	regulatory region 552732	within coordinates