rs27119171 SNP Detail

Summary

• ID
  rs27119171
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:22033761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTTGTCAT GCCTATACTG
  GTTACTATAA ATAATCTGAC TCTGTCTTAA CTCTTGGGGT TTCTGATATT TGCATAGTTC
  AGTACAGGGA GCACTTTGAA CTATGATGGT AACTTCCCCA GTTATAAGCA AATCTTTTAC
  ATTTTAAAAT CTTCATTTTG GGGGTTCCTC AGCTTTGTTC TGGGCGACAA AAAAATCTCT
  S
  CTTTCTTATC TTTTCCCTTT GGCTTGATAT TTTAATTTTT TGAAGCCTTG TGTATCTTTC
  TTGAGAAGAA AAACACATAT TATCCCTCTT TGGGTAAAGA ACAGATTTTG AATTCTGATG
  CTGCTGCAGA AGTATTTTTC ACAAGCTTAG TAAGGGGTTG TTTGGCTTTG CTGTGCAATA
  GGAATCTTCA GTGGAGAGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss37355593	NES08787282	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs27119171					SNP	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37355593	NES08787282	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:22033761 () rs orientation: forward

Symbol	Name	Function Class
Rr552731	regulatory region 552731	214 bp distal
Rr552732	regulatory region 552732	138 bp proximal