rs27119172 SNP Detail

Summary

• ID
  rs27119172
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:22033648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAGAATT TAGAACTTTC
  TTCTTTCCCT ATGAATACAC AGATCTGTTT TCCTGATGTC TGCACTCACT GCATTTCCTC
  CTACAGAAGG GGGCAGTTTT GTACAACACA GGATACTTGT CATGCCTATA CTGGTTACTA
  TAAATAATCT GACTCTGTCT TAACTCTTGG GGTTTCTGAT ATTTGCATAG TTCAGTACAG
  R
  GAGCACTTTG AACTATGATG GTAACTTCCC CAGTTATAAG CAAATCTTTT ACATTTTAAA
  ATCTTCATTT TGGGGGTTCC TCAGCTTTGT TCTGGGCGAC AAAAAAATCT CTCCTTTCTT
  ATCTTTTCCC TTTGGCTTGA TATTTTAATT TTTTGAAGCC TTGTGTATCT TTCTTGAGAA
  GAAAAACACA TATTATCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37355594	NES08787281	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27119172					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37355594	NES08787281	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:22033648 () rs orientation: forward

Symbol	Name	Function Class
Rr552731	regulatory region 552731	101 bp distal
Rr552732	regulatory region 552732	251 bp proximal