rs27119743 SNP Detail

Summary

• ID
  rs27119743
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:16362977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGTGCCC TGGTGATCTG
  TCTGGTTAGG TGTGTGGTAG TGAAGTGTCC TCCTACTGAG CAGGGACTGG CTAATCCAGC
  TTTCTCCCAA GACCACTCAT TCCACTGTGA CCCCACAGAT TGCTCCCCAT CTCTGCCCTT
  CAGCAAAGAA ATGAACAGGC AGGTCAGTGA AACACTGGGG CAGGAATCTG TGAACTCTTG
  Y
  AGACTCCCAG CAGGAGTGAG AGCAAAGAGC ACTTGAAGAG AAAAAGAAAG GAAAACTTCC
  TGGTTAGGAC AATCACTTTG GTTCTGTTTT GCTCTGTACA CCTCTTTGTT TAATTCAAGA
  AAGACTGGTA AATGGTTCTT CAGAAAGTAT GCATGTATAC CCAGCTGTCA GCCTTCAAGG
  AGTCACAGAA AGAAGTCCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37349562	NES08809512	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27119743					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37349562	NES08809512	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:16362977 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11224	CpG island 11224	941 bp distal
Plxdc2	plexin domain containing 2	within coordinates
Rr372823	regulatory region 372823	within coordinates
Rr552173	regulatory region 552173	1852 bp distal
Rr552175	regulatory region 552175	1039 bp distal
Rr552176	regulatory region 552176	within coordinates
Rr552177	regulatory region 552177	684 bp distal
Rr552178	regulatory region 552178	1223 bp proximal
Rr552179	regulatory region 552179	1363 bp proximal
Tssr16303	transcription start site region 16303	1875 bp downstream
Tssr16304	transcription start site region 16304	1850 bp downstream
Tssr16305	transcription start site region 16305	1809 bp downstream
Tssr16306	transcription start site region 16306	1779 bp downstream
Tssr16307	transcription start site region 16307	1680 bp downstream
Tssr16308	transcription start site region 16308	1551 bp downstream
Tssr16309	transcription start site region 16309	1496 bp downstream
Tssr16310	transcription start site region 16310	1462 bp downstream
Tssr16311	transcription start site region 16311	1424 bp downstream
Tssr16312	transcription start site region 16312	1371 bp downstream