rs27119746 SNP Detail

Summary

• ID
  rs27119746
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:16362815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAGGGTTTC TTGACACTGT CCCTGGAGGA GAAGGGCCTC
  CAGATACTTG CAATTGGCCG CACCCTGTGC CCTGGTGATC TGTCTGGTTA GGTGTGTGGT
  R
  GTGAAGTGTC CTCCTACTGA GCAGGGACTG GCTAATCCAG CTTTCTCCCA AGACCACTCA
  TTCCACTGTG ACCCCACAGA TTGCTCCCCA TCTCTGCCCT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37349565	NES08809509	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27119746					SNP	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37349565	NES08809509	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:16362815 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11224	CpG island 11224	779 bp distal
Plxdc2	plexin domain containing 2	within coordinates
Rr372823	regulatory region 372823	within coordinates
Rr552173	regulatory region 552173	1690 bp distal
Rr552175	regulatory region 552175	877 bp distal
Rr552176	regulatory region 552176	within coordinates
Rr552177	regulatory region 552177	522 bp distal
Rr552178	regulatory region 552178	1385 bp proximal
Rr552179	regulatory region 552179	1525 bp proximal
Tssr16299	transcription start site region 16299	1983 bp downstream
Tssr16300	transcription start site region 16300	1951 bp downstream
Tssr16301	transcription start site region 16301	1921 bp downstream
Tssr16302	transcription start site region 16302	1905 bp downstream
Tssr16303	transcription start site region 16303	1713 bp downstream
Tssr16304	transcription start site region 16304	1688 bp downstream
Tssr16305	transcription start site region 16305	1647 bp downstream
Tssr16306	transcription start site region 16306	1617 bp downstream
Tssr16307	transcription start site region 16307	1518 bp downstream
Tssr16308	transcription start site region 16308	1389 bp downstream
Tssr16309	transcription start site region 16309	1334 bp downstream
Tssr16310	transcription start site region 16310	1300 bp downstream
Tssr16311	transcription start site region 16311	1262 bp downstream
Tssr16312	transcription start site region 16312	1209 bp downstream