rs27119749 SNP Detail

Summary

• ID
  rs27119749
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:16362723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCCTTCA GGCTATCCTC
  ACTAGTTTTC TCATTGTGGG GTTACTAAGT GGATGCAGTA GAAGCAGCGG GGTTCAGGGA
  TAGAGAAGAG GTGGAGAAGA TGGGGACCAG TCGTGCCTAT GAGGACAAGC CCTGGCCCCA
  TTGTCCTCTG CCTGTCTGTT TCACAGACAG GCCCCAACAT GCCAGCAGTT CCTCAGGGTT
  Y
  CTTGACACTG TCCCTGGAGG AGAAGGGCCT CCAGATACTT GCAATTGGCC GCACCCTGTG
  CCCTGGTGAT CTGTCTGGTT AGGTGTGTGG TAGTGAAGTG TCCTCCTACT GAGCAGGGAC
  TGGCTAATCC AGCTTTCTCC CAAGACCACT CATTCCACTG TGACCCCACA GATTGCTCCC
  CATCTCTGCC CTTCAGCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37349568	NES08809506	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27119749					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37349568	NES08809506	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:16362723 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11224	CpG island 11224	687 bp distal
Plxdc2	plexin domain containing 2	within coordinates
Rr372823	regulatory region 372823	within coordinates
Rr552173	regulatory region 552173	1598 bp distal
Rr552175	regulatory region 552175	785 bp distal
Rr552176	regulatory region 552176	within coordinates
Rr552177	regulatory region 552177	430 bp distal
Rr552178	regulatory region 552178	1477 bp proximal
Rr552179	regulatory region 552179	1617 bp proximal
Tssr16299	transcription start site region 16299	1891 bp downstream
Tssr16300	transcription start site region 16300	1859 bp downstream
Tssr16301	transcription start site region 16301	1829 bp downstream
Tssr16302	transcription start site region 16302	1813 bp downstream
Tssr16303	transcription start site region 16303	1621 bp downstream
Tssr16304	transcription start site region 16304	1596 bp downstream
Tssr16305	transcription start site region 16305	1555 bp downstream
Tssr16306	transcription start site region 16306	1525 bp downstream
Tssr16307	transcription start site region 16307	1426 bp downstream
Tssr16308	transcription start site region 16308	1297 bp downstream
Tssr16309	transcription start site region 16309	1242 bp downstream
Tssr16310	transcription start site region 16310	1208 bp downstream
Tssr16311	transcription start site region 16311	1170 bp downstream
Tssr16312	transcription start site region 16312	1117 bp downstream