rs27119754 SNP Detail

Summary

• ID
  rs27119754
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:16362259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTCTCAA TTGTTTTTGT
  GTGTGGCTGA AGATCCTTCC GGTGTCTTCG AACCTCCATC CTCATCTCAC ACCCACCCAA
  AGTATCTGCC CTTGGGAAAC TTATCCTAGT TGTTTTTCTG GGAAACTTGA GTTTCTCGAA
  TGGGGAAAGA GGTTTGCTTG ATCAAAAGGT GTGGGAAACC AGGACTTCCC TGAAGCTATG
  R
  TGCTTACTCC ACCTGGGCGC CAGGGGGTGG TCCTGCCTAA CCCCAAGTAG CCCAAAGAGG
  TCGGGGTGTG AGAGAGCCTG CTGCTGCGGA TACCTCTCTG AATCTTGGTT ACATCAGGTT
  GTTTCCCCTC TGGATTCTCA TCCCTTGGAG CTCAGAGGCT CTTCCCTGTG CGCCGCGGAA
  GGGATGGATG GATGAACAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37349573	NES08809501	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27119754					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37349573	NES08809501	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:16362259 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11224	CpG island 11224	223 bp distal
Plxdc2	plexin domain containing 2	within coordinates
Rr372823	regulatory region 372823	within coordinates
Rr552173	regulatory region 552173	1134 bp distal
Rr552174	regulatory region 552174	1555 bp distal
Rr552175	regulatory region 552175	321 bp distal
Rr552176	regulatory region 552176	within coordinates
Rr552177	regulatory region 552177	13 bp proximal
Rr552178	regulatory region 552178	1941 bp proximal
Tssr16298	transcription start site region 16298	1792 bp downstream
Tssr16299	transcription start site region 16299	1427 bp downstream
Tssr16300	transcription start site region 16300	1395 bp downstream
Tssr16301	transcription start site region 16301	1365 bp downstream
Tssr16302	transcription start site region 16302	1349 bp downstream
Tssr16303	transcription start site region 16303	1157 bp downstream
Tssr16304	transcription start site region 16304	1132 bp downstream
Tssr16305	transcription start site region 16305	1091 bp downstream
Tssr16306	transcription start site region 16306	1061 bp downstream
Tssr16307	transcription start site region 16307	962 bp downstream
Tssr16308	transcription start site region 16308	833 bp downstream
Tssr16309	transcription start site region 16309	778 bp downstream
Tssr16310	transcription start site region 16310	744 bp downstream
Tssr16311	transcription start site region 16311	706 bp downstream
Tssr16312	transcription start site region 16312	653 bp downstream