rs27119762 SNP Detail

Summary

• ID
  rs27119762
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:16361774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GAGAGCTCCC GAAGTTCGGA GAGGGTTCAG CTGTCTCTCC TTCACTTCTG
  Y
  TACCCGGAGT GAAATCCTAG CGAAACTGTC AGAGGCCTCC GGATCCCACC           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37349581	NES08809493	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27119762					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37349581	NES08809493	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:16361774 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11224	CpG island 11224	within coordinates
Plxdc2	plexin domain containing 2	within coordinates
Rr372823	regulatory region 372823	within coordinates
Tssr16298	transcription start site region 16298	1307 bp downstream
Tssr16299	transcription start site region 16299	942 bp downstream
Tssr16300	transcription start site region 16300	910 bp downstream
Tssr16301	transcription start site region 16301	880 bp downstream
Tssr16302	transcription start site region 16302	864 bp downstream
Tssr16303	transcription start site region 16303	672 bp downstream
Tssr16304	transcription start site region 16304	647 bp downstream
Tssr16305	transcription start site region 16305	606 bp downstream
Tssr16306	transcription start site region 16306	576 bp downstream
Tssr16307	transcription start site region 16307	477 bp downstream
Tssr16308	transcription start site region 16308	348 bp downstream
Tssr16309	transcription start site region 16309	293 bp downstream
Tssr16310	transcription start site region 16310	259 bp downstream
Tssr16311	transcription start site region 16311	221 bp downstream
Tssr16312	transcription start site region 16312	168 bp downstream