rs27119764 SNP Detail

Summary

• ID
  rs27119764
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:16361160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAAGCTC AGCCAATGGA
  CAGGTTGGTG CTGGCTGCGG GTTTTGGGAG GAAGGTGGGA GAAGCCTGGA GGAGAGAAGG
  GGAGGGAGGA GGGCGGAGGG AAGAGAGGAG GGTTCAGCGG TAGATCTAGC AAATGGCAAG
  CCGCCTTCCC TCCCCAAAGT GTAGAGCTGG AGCGCGGGGG AGCGCGGCGG CGCCTCCGCC
  W
  CCAAACTCCT GGGGCTCCGC GGCGTTCGGA GCCACCTCCT GCCTAGCCCG GAGGGGCTCT
  CTTACCAGGC TGCAACCTCA CTTTCCCGTT TTTCTTTTTC TTTAAAAAAC ACCCCCACCT
  CTCTTCTGCT CACAGCAGCT GGTGCATTCC CGGCTCTACT CTCCGGAGCT GCCCATCCCT
  CCGGCTGCGG GCGAGGACGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37349583	NES08809491	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27119764					SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37349583	NES08809491	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:16361160 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11224	CpG island 11224	within coordinates
Plxdc2	plexin domain containing 2	within coordinates
Rr372823	regulatory region 372823	within coordinates
Rr552173	regulatory region 552173	35 bp distal
Rr552174	regulatory region 552174	456 bp distal
Rr552175	regulatory region 552175	48 bp proximal
Rr552176	regulatory region 552176	779 bp proximal
Rr552177	regulatory region 552177	1112 bp proximal
Tssr16298	transcription start site region 16298	693 bp downstream
Tssr16299	transcription start site region 16299	328 bp downstream
Tssr16300	transcription start site region 16300	296 bp downstream
Tssr16301	transcription start site region 16301	266 bp downstream
Tssr16302	transcription start site region 16302	250 bp downstream
Tssr16303	transcription start site region 16303	58 bp downstream
Tssr16304	transcription start site region 16304	33 bp downstream
Tssr16305	transcription start site region 16305	within coordinates
Tssr16306	transcription start site region 16306	16 bp upstream
Tssr16307	transcription start site region 16307	101 bp upstream
Tssr16308	transcription start site region 16308	232 bp upstream
Tssr16309	transcription start site region 16309	276 bp upstream
Tssr16310	transcription start site region 16310	327 bp upstream
Tssr16311	transcription start site region 16311	370 bp upstream
Tssr16312	transcription start site region 16312	395 bp upstream