rs27119765 SNP Detail

Summary

• ID
  rs27119765
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:16360880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCAGAAG ATAGTGGGCG
  CTCCCTGGGG GGCCTCATCC CTCTCTACCC GCAGGCTGAC ACCCAAAAGC CACGGAAGCC
  TGGAGGGTGC AGGCGGCATC GGTTCCTCTG CAAAGGTCAT GAACCGGGTG GGCGGATGGC
  GTCCGGGAGA CTAGAATCTG CCACCGCCCC ACTCGCACCA GTCCTCGGGT GTTTGGGGCC
  K
  CAATGGTCCT CTGGCTTTCC CCAGCCAGTC TTCTCGGGCT TCATCTGTGG GAGACTTTTC
  TGGCGCCCCC TCTCCCCCGA GAAAAGCTCA GCCAATGGAC AGGTTGGTGC TGGCTGCGGG
  TTTTGGGAGG AAGGTGGGAG AAGCCTGGAG GAGAGAAGGG GAGGGAGGAG GGCGGAGGGA
  AGAGAGGAGG GTTCAGCGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37349584	NES08809490	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27119765					SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37349584	NES08809490	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:16360880 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11224	CpG island 11224	within coordinates
Plxdc2	plexin domain containing 2	235 bp upstream
Rr372823	regulatory region 372823	within coordinates
Rr552173	regulatory region 552173	within coordinates
Rr552174	regulatory region 552174	176 bp distal
Rr552175	regulatory region 552175	328 bp proximal
Rr552176	regulatory region 552176	1059 bp proximal
Rr552177	regulatory region 552177	1392 bp proximal
Tssr16298	transcription start site region 16298	413 bp downstream
Tssr16299	transcription start site region 16299	48 bp downstream
Tssr16300	transcription start site region 16300	16 bp downstream
Tssr16301	transcription start site region 16301	11 bp upstream
Tssr16302	transcription start site region 16302	18 bp upstream
Tssr16303	transcription start site region 16303	205 bp upstream
Tssr16304	transcription start site region 16304	225 bp upstream
Tssr16305	transcription start site region 16305	254 bp upstream
Tssr16306	transcription start site region 16306	296 bp upstream
Tssr16307	transcription start site region 16307	381 bp upstream
Tssr16308	transcription start site region 16308	512 bp upstream
Tssr16309	transcription start site region 16309	556 bp upstream
Tssr16310	transcription start site region 16310	607 bp upstream
Tssr16311	transcription start site region 16311	650 bp upstream
Tssr16312	transcription start site region 16312	675 bp upstream