rs27119767 SNP Detail

Summary

• ID
  rs27119767
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:16360381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGCCCAGG CAGTGCTCCA
  GAACATGTAT TTTTCACCAA GGATGCATTG TCTCTTTGCT TTCTATTTAG CCCCATTAAA
  AGATGGCTAA GTGTATGCAA ATTAAATTAA ATTAAATGTA AGCGGATAAG GGGCCTGGAA
  AGGGTTAATG CTGAAGCAGA CCCTCAAGCT GAAAAAACAA AAACAAACTA GCAAGCAAAA
  R
  CCCTTTAAAC CCCCTATAGG AAATTCAATG GGCTTCCTGT TTCTTTAAAC TCTCCCTTTC
  CCTCCTTCTG ACACTTTACC AAACCGCGGT GGCGGCCTCA GGACCCTGCA GCCCAGAGCC
  ACCTCCACCT CCCTCTGTGC GGGTCTGGGG TAGGAGGGGC TTTTGATGGG ATGGGGGCTG
  GGAGTTGGGG GATGTCAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37349586	NES08809488	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27119767					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37349586	NES08809488	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:16360381 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11224	CpG island 11224	209 bp proximal
Plxdc2	plexin domain containing 2	734 bp upstream
Rr372823	regulatory region 372823	44 bp upstream
Rr552173	regulatory region 552173	244 bp proximal
Rr552174	regulatory region 552174	302 bp proximal
Rr552175	regulatory region 552175	827 bp proximal
Rr552176	regulatory region 552176	1558 bp proximal
Rr552177	regulatory region 552177	1891 bp proximal
Tssr16298	transcription start site region 16298	67 bp upstream
Tssr16299	transcription start site region 16299	440 bp upstream
Tssr16300	transcription start site region 16300	465 bp upstream
Tssr16301	transcription start site region 16301	510 bp upstream
Tssr16302	transcription start site region 16302	517 bp upstream
Tssr16303	transcription start site region 16303	704 bp upstream
Tssr16304	transcription start site region 16304	724 bp upstream
Tssr16305	transcription start site region 16305	753 bp upstream
Tssr16306	transcription start site region 16306	795 bp upstream
Tssr16307	transcription start site region 16307	880 bp upstream
Tssr16308	transcription start site region 16308	1011 bp upstream
Tssr16309	transcription start site region 16309	1055 bp upstream
Tssr16310	transcription start site region 16310	1106 bp upstream
Tssr16311	transcription start site region 16311	1149 bp upstream
Tssr16312	transcription start site region 16312	1174 bp upstream