rs27119768 SNP Detail

Summary

• ID
  rs27119768
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:16360147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCGGCTGAA CCCAGAACAC
  TTTCGAATGT GTTTAAATTA GCTCTCCCTT TGTCTTCAAG AAAGAGCATT TCTCTTCAGG
  CTAGCAGATG ATTTAAAAAA TTAAGTTCAC TTGGCTAATC CTCCTTTCTA GGACCTTCTA
  TGAACTTCAG TATAAAATCT TCCTGATTTG ATGCCTGGAG ACCTGAGGCT TAAAGCTTAA
  R
  TAAATTGCTC CTTGTGGAAA AAAAATTGAA GTACTAGCCC AGGCAGTGCT CCAGAACATG
  TATTTTTCAC CAAGGATGCA TTGTCTCTTT GCTTTCTATT TAGCCCCATT AAAAGATGGC
  TAAGTGTATG CAAATTAAAT TAAATTAAAT GTAAGCGGAT AAGGGGCCTG GAAAGGGTTA
  ATGCTGAAGC AGACCCTCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37349587	NES08809487	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27119768					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37349587	NES08809487	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:16360147 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11224	CpG island 11224	443 bp proximal
Plxdc2	plexin domain containing 2	968 bp upstream
Rr372823	regulatory region 372823	278 bp upstream
Tssr16298	transcription start site region 16298	301 bp upstream
Tssr16299	transcription start site region 16299	674 bp upstream
Tssr16300	transcription start site region 16300	699 bp upstream
Tssr16301	transcription start site region 16301	744 bp upstream
Tssr16302	transcription start site region 16302	751 bp upstream
Tssr16303	transcription start site region 16303	938 bp upstream
Tssr16304	transcription start site region 16304	958 bp upstream
Tssr16305	transcription start site region 16305	987 bp upstream
Tssr16306	transcription start site region 16306	1029 bp upstream
Tssr16307	transcription start site region 16307	1114 bp upstream
Tssr16308	transcription start site region 16308	1245 bp upstream
Tssr16309	transcription start site region 16309	1289 bp upstream
Tssr16310	transcription start site region 16310	1340 bp upstream
Tssr16311	transcription start site region 16311	1383 bp upstream
Tssr16312	transcription start site region 16312	1408 bp upstream