rs27119769 SNP Detail

Summary

• ID
  rs27119769
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:16359576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAGTGCT CATTCCTTGT
  TCACAACCAC TCAAGGGAGA ACAGAATTAA TATCAAATAT AATTAGTAGT CTATCCACAA
  CCGGTGTCAG CCATTCAAAG TGCAGAAGGA AAACTCAACA TCGATGACTG TCCCATTAAT
  TTTTCATTAG GAAACCACTC TTTTAAACTT GATGTAAATA CTCTAGATAC ACAGATTGAG
  M
  TGTAATTGAG GATTTAAAAC ACTCTTGGTA GAGCAAAAAT AAGAGAATTA CAGTCTTAAG
  TCTGGTTGGC AAGAGGACAT CAACCACTCA GAAGAAAGCT CAGGATTTAT CAAGCATCTT
  GGAATAATAA AAGGTGTAAG CATGGAGTAT TTAAACCTTC ACAAATATCC CAAAATAGAG
  AAACGAGTCT TATTTTAGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37349588	NES08809486	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27119769					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37349588	NES08809486	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:16359576 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11224	CpG island 11224	1014 bp proximal
Plxdc2	plexin domain containing 2	1539 bp upstream
Rr372823	regulatory region 372823	849 bp upstream
Rr552173	regulatory region 552173	1049 bp proximal
Rr552174	regulatory region 552174	1107 bp proximal
Rr552175	regulatory region 552175	1632 bp proximal
Tssr16298	transcription start site region 16298	872 bp upstream
Tssr16299	transcription start site region 16299	1245 bp upstream
Tssr16300	transcription start site region 16300	1270 bp upstream
Tssr16301	transcription start site region 16301	1315 bp upstream
Tssr16302	transcription start site region 16302	1322 bp upstream
Tssr16303	transcription start site region 16303	1509 bp upstream
Tssr16304	transcription start site region 16304	1529 bp upstream
Tssr16305	transcription start site region 16305	1558 bp upstream
Tssr16306	transcription start site region 16306	1600 bp upstream
Tssr16307	transcription start site region 16307	1685 bp upstream
Tssr16308	transcription start site region 16308	1816 bp upstream
Tssr16309	transcription start site region 16309	1860 bp upstream
Tssr16310	transcription start site region 16310	1911 bp upstream
Tssr16311	transcription start site region 16311	1954 bp upstream
Tssr16312	transcription start site region 16312	1979 bp upstream