rs27119770 SNP Detail

Summary

• ID
  rs27119770
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:16359498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTCCTTT TATCTGCCTA
  ATCATCAGCT CTTCTTTATT TTACAAATTA AGGTGGGAAG CAGGTTTACA GGAAGTCACC
  TGAGTGCTCA TTCCTTGTTC ACAACCACTC AAGGGAGAAC AGAATTAATA TCAAATATAA
  TTAGTAGTCT ATCCACAACC GGTGTCAGCC ATTCAAAGTG CAGAAGGAAA ACTCAACATC
  R
  ATGACTGTCC CATTAATTTT TCATTAGGAA ACCACTCTTT TAAACTTGAT GTAAATACTC
  TAGATACACA GATTGAGATG TAATTGAGGA TTTAAAACAC TCTTGGTAGA GCAAAAATAA
  GAGAATTACA GTCTTAAGTC TGGTTGGCAA GAGGACATCA ACCACTCAGA AGAAAGCTCA
  GGATTTATCA AGCATCTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37349589	NES08809485	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27119770					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37349589	NES08809485	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:16359498 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11224	CpG island 11224	1092 bp proximal
Plxdc2	plexin domain containing 2	1617 bp upstream
Rr372823	regulatory region 372823	927 bp upstream
Tssr16298	transcription start site region 16298	950 bp upstream
Tssr16299	transcription start site region 16299	1323 bp upstream
Tssr16300	transcription start site region 16300	1348 bp upstream
Tssr16301	transcription start site region 16301	1393 bp upstream
Tssr16302	transcription start site region 16302	1400 bp upstream
Tssr16303	transcription start site region 16303	1587 bp upstream
Tssr16304	transcription start site region 16304	1607 bp upstream
Tssr16305	transcription start site region 16305	1636 bp upstream
Tssr16306	transcription start site region 16306	1678 bp upstream
Tssr16307	transcription start site region 16307	1763 bp upstream
Tssr16308	transcription start site region 16308	1894 bp upstream
Tssr16309	transcription start site region 16309	1938 bp upstream
Tssr16310	transcription start site region 16310	1989 bp upstream