rs27120391 SNP Detail

Summary

• ID
  rs27120391
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:20303973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGGGAAA GACTCAGAGA
  GAGCTGTGCA TCTGTACCAC AAAACCTGAG GGAGGAAACT CAAAACTGAG CATGAATGCA
  AGAGTTGTGC CATGCTCACA ATAGGCACAC GGAAATGGAT ATTCCATGGC TTGAGGTCTT
  TGAGTGTAGC TGTACCCAGC CATTGGTCAA CCACTGAATC AAGCAATCAT GAGGGTGATC
  R
  CTTAGGAAGA CAGATTGAAA GCATAACTGA AGATACAAAA ATTGAACACA GATTTTAGTT
  ATAGCACAGG GAAAAAAACA GTTTCTGAAG ACTAATTCCA ACAAGTTTTC TTACAAGGAG
  TGAGTTTATA ATAGCGACAT ATTATGTAAA ATATCAGTTT TCAATAAAAC GCTACAAAAA
  AATGCAAGAC AAAAACAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37361619	NES08791907	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27120391					SNP	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37361619	NES08791907	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:20303973 () rs orientation: forward

Symbol	Name	Function Class
D2Ucl3	DNA segment, Chr 2, University College London 3	1412 bp proximal
Etl4	enhancer trap locus 4	within coordinates
Gm17171	predicted gene 17171	1655 bp downstream