rs27120396 SNP Detail

Summary

• ID
  rs27120396
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:20303690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGCTGTTTA ACTGTCGGGA GCAGCCAACT TGATGTGGAA
  TGGAAGGGAA AAGCCACGCT AAGGGTCTTG ACTATAAAAG CAAACAGAAG TCGTCGTGAA
  R
  AATGCCTTTC TGCAGCTTGA GGCATGGTCC TGGTTACATA AGCACTGGGC AAGCAAGAAG
  TGCAGTAGAG AAAGCTCAGA GGGAAAGGGA AAGACTCAGA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NZW/LacJ	PWD/PhJ
ss37361624	NES08791900	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NZW/LacJ	PWD/PhJ
rs27120396					SNP	A	A	A	G	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37361624	NES08791900	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:20303690 () rs orientation: forward

Symbol	Name	Function Class
D2Ucl3	DNA segment, Chr 2, University College London 3	1695 bp proximal
Etl4	enhancer trap locus 4	within coordinates
Gm17171	predicted gene 17171	1938 bp downstream