rs27121175 SNP Detail

Summary

• ID
  rs27121175
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:20646371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTCCTGGA AGAACAGCCA
  GTGCTTGACT ACTGAGCCAT CTCCCCAGCC CCTTCAATTC TCTTTTAAAT ATAGTCTGAT
  TCTTCCAGGT AGAGAAAGTG GATATTGTGA AACAGTATTG GAAGTGCGTG GCAGGTGAAT
  ATTACGACAC TGAGACAATT CTCTTAGCCT GTCCATGAGA ACAGTGGTCA TGTATATGTG
  Y
  AGTGGGCATC ATGAAAACTA GTTTACCATT AGCTTATGTT CTGTATATTT ACTTTACAGT
  GTAATCTTTT TCCCTCTCCA AGGTATAGCA AAGTTATAGA AATCATTGTA TTACCCTTCA
  AACACACTGC TTTGGAAGCC AGCATTTAGG ACAGATTTTT TTTTCCCTAG GGCAATGAAA
  TGCAGGCTGT GCGTGCGCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37360494	NES08782889	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27121175					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37360494	NES08782889	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:20646371 () rs orientation: forward

Symbol	Name	Function Class
Etl4	enhancer trap locus 4	within coordinates
Rr366849	regulatory region 366849	within coordinates