rs27121180 SNP Detail

Summary

• ID
  rs27121180
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:20645626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAGAACTC AGACCAGATG
  GTGATAATAA GTCTGAACAT AGACAAAATT GGTAGAGCCA AACAGACTTT CATAACAATT
  GCCATGAGAG AACCCCTGAG ATATCCCTTG GAGGCACCTC CCTAAGAGCC CACTATATGC
  CCATGAGGTA CTACCTCCTC ATTGGTACTA CCCTAAAGAC TAAGTTCTCA ATTATAATGA
  R
  TCCTCCACAG ACAACCACAC CCTAGCCACA GTCTGTATTT GTGGTAGGTA ATGTTTGAGC
  TGAACAGCAA GGCTACCACT GGGTAAGACA TTTCTTTGGG GTAAGTTCCA GGAATAGTTG
  ATCCCTTTGC AGAGGTGACC TGAGCAGGTT CCTCCCAGAC ACTGTATTAA ACACTGGGTA
  GGAACACAGC CACCTCTACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37360499	NES08782960	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27121180					SNP	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37360499	NES08782960	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:20645626 () rs orientation: forward

Symbol	Name	Function Class
Etl4	enhancer trap locus 4	within coordinates
Rr366849	regulatory region 366849	719 bp upstream