rs27121183 SNP Detail

Summary

• ID
  rs27121183
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:20645138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTGAGACA GTAAAAGACA
  GGGTGCTGGG CATAGATCAG AACACTCGTG GAGTGTTGAT TGGGGGTGGG GGGGTCCTGG
  GAATGTCGGG CTGGGTACAG GTCTCTGAAA TGTGTAGTCA AGTTCCTAGG TCACATGTCT
  GAAATTCAAG ACACACTAGG TAGCTAATTA TTAAGAAATA GGCCTCCAGA TCAAGCAGGC
  Y
  ACACTAACCA GGAGTTGTGA GGCCTATGCC CCTTTCCAGC TCTGCAGTCA TTCATTCTGT
  AAGTGACAAG GCATCCATCA GGAGATATGC CCTGCCTTTA TCATGCTCAC AGGGTAAAGA
  ATGGGCATTT GGAGAGGGAG GCAGGGAGGA AACAAACTAC TCATGACATC AATTATGTCA
  CCTGTCATCT CTGTGTCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37360502	NES08782957	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27121183					SNP	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37360502	NES08782957	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:20645138 () rs orientation: forward

Symbol	Name	Function Class
Etl4	enhancer trap locus 4	within coordinates
Rr366849	regulatory region 366849	1207 bp upstream