rs27121444 SNP Detail

Summary

• ID
  rs27121444
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:21285665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACAGAACA CAGAGAAAGA
  GGACCTCATG CCAATTCCAC AAATATTCCA GTTTGTTCCC CAAAAGCTAC CTCACGGAGA
  GGTAGGTAGC TCCTGCTACC CAGACAAAAA CTGAACAAGG GTCAGCTTTG CCGTGAGGTA
  GAATTAACTA TGAAAGCAAG CCTGGCATGC ACTTCTGCCT CTGCCTAATG AGCTCCACAG
  K
  AAGCCAGGTC GGCTGCAAGG ACAGCAGGTG TCCCACATGT CCACAGGCCA CTTCACTGAG
  GTGGGCACAG CTCCAGTCTC ATGCTTCTGG GCCTGGAAGG CAGGTGGTGG CCGGCACAGC
  AGGAACCTAG ACCACTAGGG GGCGCCTGGA CATCGGTTCC CAGGCTGCAG TGCTCTCAGG
  GCCTGAGCAT CACCATGTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37357465	NES08795400	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27121444					SNP	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37357465	NES08795400	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:21285665 () rs orientation: forward

Symbol	Name	Function Class
Gm54105	predicted gene, 54105	within coordinates
Rr552698	regulatory region 552698	within coordinates
Rr552699	regulatory region 552699	128 bp proximal
Rr552700	regulatory region 552700	1537 bp proximal