rs27121445 SNP Detail

Summary

• ID
  rs27121445
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:21285564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCAAGAGC CTTGGGGCCA
  ATCTATAGAA TTGTGCTAGA TGAGTGTTAA AAGGTTTGAG TTAACTTTGC GGTTGCTTCT
  AGTCCCTTCA TTTCACATGT GGGACAGAAC ACAGAGAAAG AGGACCTCAT GCCAATTCCA
  CAAATATTCC AGTTTGTTCC CCAAAAGCTA CCTCACGGAG AGGTAGGTAG CTCCTGCTAC
  Y
  CAGACAAAAA CTGAACAAGG GTCAGCTTTG CCGTGAGGTA GAATTAACTA TGAAAGCAAG
  CCTGGCATGC ACTTCTGCCT CTGCCTAATG AGCTCCACAG GAAGCCAGGT CGGCTGCAAG
  GACAGCAGGT GTCCCACATG TCCACAGGCC ACTTCACTGA GGTGGGCACA GCTCCAGTCT
  CATGCTTCTG GGCCTGGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37357466	NES08795399	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27121445					SNP	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37357466	NES08795399	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:21285564 () rs orientation: forward

Symbol	Name	Function Class
Gm54105	predicted gene, 54105	within coordinates
Rr552698	regulatory region 552698	within coordinates
Rr552699	regulatory region 552699	229 bp proximal
Rr552700	regulatory region 552700	1638 bp proximal