rs27121446 SNP Detail

Summary

• ID
  rs27121446
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:21285324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTAGGTGTT TTTGTTTCCC CCCTTTGACA TTACAGTTTA
  GAAGTGATGA ACTGAGATGT GAGTCTTGCA GTTTGTCATC TGTCCATGCC CTTCACATGA
  Y
  AGTGTTGCCT AGTTCTGACT CAGCATGAAT GCGGGTCTGA ACCAAGAGCC TTGGGGCCAA
  TCTATAGAAT TGTGCTAGAT GAGTGTTAAA AGGTTTGAGT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37357467	NES08795398	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27121446					SNP	T	T	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37357467	NES08795398	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:21285324 () rs orientation: forward

Symbol	Name	Function Class
Gm54105	predicted gene, 54105	within coordinates
Rr552698	regulatory region 552698	181 bp proximal
Rr552699	regulatory region 552699	469 bp proximal
Rr552700	regulatory region 552700	1878 bp proximal