rs27121456 SNP Detail

Summary

• ID
  rs27121456
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:21283960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTATTTCCA CATCAGCATA
  TATCGGTTTC TCCTGTGGAA GGAGGCAAGT TCTCTTGTGC AAGCTTCCAC CCTCCTGTGA
  TGGTTCTTTG CTGCCATGGC CCAATAGCTC AGTAGGGCAT CTGGCATGGC ATCAGGACGT
  GGCAACTTGG TGTGGGTACA AGTCTATTCA GACTTACTGT CCCTTCCACT TTCTTGTTTG
  Y
  TCCTCACTTG AAGCAATCAA CTTTCACCAG GTAAACAAAA AGCTGGCCAA AAGAAGGTAA
  TAGAGGAAAT AAATCTTGCT AATGGTCTGC AAGACTCCAG TCCATCATGG TGGGAGTGGC
  GTGGCAAAGA AGCTCACAAG AAGCAGATAG AGGAAGAGGA GAACAAGAGG CCAGAGCAAA
  ATACAGCTCT AATGCACACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37357477	NES08795466	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27121456					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37357477	NES08795466	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:21283960 () rs orientation: forward

Symbol	Name	Function Class
Gm54105	predicted gene, 54105	within coordinates
Rr552698	regulatory region 552698	1545 bp proximal
Rr552699	regulatory region 552699	1833 bp proximal