rs27124489 SNP Detail

Summary

• ID
  rs27124489
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:19434824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTTTCAG CAAACTACAT
  AGATATACCA CTGTCTCCGG GGGTCACAGT TATTCACCCC TTGTTCCAGT GCAGTTGTCT
  GAAAATAGAG TTAGAAAATT GAAAATGAGA CGGATGTCGG GGAGGAGAGG ATGCTGGTTG
  CTGTGGCGTC TTGGCTTCCA TGTTTAGAAG CCAAACGGAT TCCAAGATTG CTGGGTGATA
  M
  ACCCTAGCCA GCGGCACAGC TCCTGGCCTT CTGCAGGGGT CCGTGCAACC TCGGCGCTAG
  CAGCTGTCCC CTCTCAAGGA TCGTCAGCCA CAGAGTTCAT GGCCAAACTT GGAAGAACAG
  GGGTGGTCCC GTGGTGGCAC CTGTGCCAGA GACGCCCTGA GCGCACTGCA CAGAAAGAGG
  ACACTTCACT GTGGCCGGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37364508	NES08787548	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	A	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27124489					SNP	C	C	C	A	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37364508	NES08787548	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:19434824 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11251	CpG island 11251	within coordinates
Cpgi11252	CpG island 11252	703 bp proximal
Gm13344	predicted gene 13344	within coordinates
Gm33940	predicted gene, 33940	within coordinates
Rr499	regulatory region 499	77 bp proximal
Rr41803	regulatory region 41803	1177 bp proximal
Tssr22819	transcription start site region 22819	1837 bp downstream
Tssr22820	transcription start site region 22820	1981 bp downstream