rs27124491 SNP Detail

Summary

• ID
  rs27124491
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:19434624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTGCCAC GAAGATTAAT
  ATTCCCGGAG AAGATAACGG AAGTCCCGTG AGGGGACAGC TCGAACATTA GTTTTCTCTT
  TGTGAATTAA GAAACTGGTC ACAAAAGATT ACTAATCACC CCTATAACAC AGCAAATCAC
  TGACCACCAT AAGCTTAACG CCCAGATTTC CAGGGAATAT CCACCCATGC CCAAATTGGT
  Y
  CCTTTTCAGC AAACTACATA GATATACCAC TGTCTCCGGG GGTCACAGTT ATTCACCCCT
  TGTTCCAGTG CAGTTGTCTG AAAATAGAGT TAGAAAATTG AAAATGAGAC GGATGTCGGG
  GAGGAGAGGA TGCTGGTTGC TGTGGCGTCT TGGCTTCCAT GTTTAGAAGC CAAACGGATT
  CCAAGATTGC TGGGTGATAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37364510	NES08787546	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27124491					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37364510	NES08787546	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:19434624 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11251	CpG island 11251	117 bp proximal
Cpgi11252	CpG island 11252	903 bp proximal
Gm13344	predicted gene 13344	within coordinates
Gm33940	predicted gene, 33940	within coordinates
Rr499	regulatory region 499	277 bp proximal
Rr41803	regulatory region 41803	1377 bp proximal