rs27124493 SNP Detail

Summary

• ID
  rs27124493
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:19434483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGTCCTGC TTGGTGGTTT
  CGGTATAAGG GTGAGAAGAG GAGGAACCCA GGTGTTCTGG GCTCTGATGT TCTGGGATTT
  CTTTTTCTAA GGGCTTATTC TTCAGGTTAA TGTATAATTC CTGATTCTAA CAAAGGACTA
  CTCTCTGCCA CGAAGATTAA TATTCCCGGA GAAGATAACG GAAGTCCCGT GAGGGGACAG
  S
  TCGAACATTA GTTTTCTCTT TGTGAATTAA GAAACTGGTC ACAAAAGATT ACTAATCACC
  CCTATAACAC AGCAAATCAC TGACCACCAT AAGCTTAACG CCCAGATTTC CAGGGAATAT
  CCACCCATGC CCAAATTGGT CCCTTTTCAG CAAACTACAT AGATATACCA CTGTCTCCGG
  GGGTCACAGT TATTCACCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37364512	NES08787544	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27124493					SNP	C	C	C	C	C	G	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37364512	NES08787544	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:19434483 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11251	CpG island 11251	258 bp proximal
Cpgi11252	CpG island 11252	1044 bp proximal
Gm13344	predicted gene 13344	within coordinates
Gm33940	predicted gene, 33940	within coordinates
Rr499	regulatory region 499	418 bp proximal
Rr41803	regulatory region 41803	1518 bp proximal