rs27124494 SNP Detail

Summary

• ID
  rs27124494
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:19434441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCCCTCT TTGCACAACG
  AGGTTAGGAG TAGCTCTTGT TTCTAGTCCT GCTTGGTGGT TTCGGTATAA GGGTGAGAAG
  AGGAGGAACC CAGGTGTTCT GGGCTCTGAT GTTCTGGGAT TTCTTTTTCT AAGGGCTTAT
  TCTTCAGGTT AATGTATAAT TCCTGATTCT AACAAAGGAC TACTCTCTGC CACGAAGATT
  R
  ATATTCCCGG AGAAGATAAC GGAAGTCCCG TGAGGGGACA GCTCGAACAT TAGTTTTCTC
  TTTGTGAATT AAGAAACTGG TCACAAAAGA TTACTAATCA CCCCTATAAC ACAGCAAATC
  ACTGACCACC ATAAGCTTAA CGCCCAGATT TCCAGGGAAT ATCCACCCAT GCCCAAATTG
  GTCCCTTTTC AGCAAACTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37364513	NES08787543	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27124494					SNP	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37364513	NES08787543	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:19434441 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11251	CpG island 11251	300 bp proximal
Cpgi11252	CpG island 11252	1086 bp proximal
Gm13344	predicted gene 13344	within coordinates
Gm33940	predicted gene, 33940	within coordinates
Rr499	regulatory region 499	460 bp proximal
Rr41803	regulatory region 41803	1560 bp proximal