rs27124501 SNP Detail

Summary

• ID
  rs27124501
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:19433720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCCTGGG ATACATTGTG
  AGACCTTGCC TCACAAGACA AACACACCGC TTTCCAAGCT TTCCCACCTG TCTCTTCTAA
  GACAGCATCA TCTCAAGGCC CAAAGGCAAT GAAGTCCCTG ATTAGCACCA GAGAGTAGAC
  TTGGTGAACA GTTCTTTGAT AGATTTTGCT CTTCACCTAC ACTTCCAACA GTGTTATTTA
  R
  ATCAGATAAT CAAAGAAATC TAAAAATATA TATATAATAA TAATAAATTC AAGTATCATT
  AAGATACTGC AAGACTGTCC TTTAGAAGTT TTCCCAACAC TGATTCCACA CAAGGGGGAG
  GGGCTGTGGG AGGGGAGACA TAGAAAGTAG AGTAAGCAGG AACCCTGGGC AGGAAAAACG
  AGAAGGCAAA ATGCTTTTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	MOLF/EiJ	NZW/LacJ
ss37364520	NES08787536	PERLEGEN	MM_PANEL2	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	MOLF/EiJ	NZW/LacJ
rs27124501					SNP	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37364520	NES08787536	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:19433720 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11251	CpG island 11251	1021 bp proximal
Cpgi11252	CpG island 11252	1807 bp proximal
Gm13344	predicted gene 13344	195 bp downstream
Gm33940	predicted gene, 33940	within coordinates
Rr499	regulatory region 499	1181 bp proximal