rs27124914 SNP Detail

Summary

• ID
  rs27124914
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43630047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAT ATGCACACAT TTTTTTCAAA
  Y
  GCCGGTACTT AAAAACACAC AGAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss37376640	NES08729552	PERLEGEN	MM_PANEL2	f	SNP			T	C	T	C		T		C
ss146478651	ENSMUSSNP2813335	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320269134	CHEV_2_43595555	CHEVERUD	SCREENING_POP	f	SNP							C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs27124914					SNP	C	C	T	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37376640	NES08729552	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43630047 () rs orientation: forward

Symbol	Name	Function Class
Gm39804	predicted gene, 39804	662 bp downstream
Rr556296	regulatory region 556296	1814 bp distal
Rr556297	regulatory region 556297	95 bp distal
Tssr17595	transcription start site region 17595	488 bp downstream
Tssr23873	transcription start site region 23873	1355 bp upstream
Tssr23874	transcription start site region 23874	1006 bp upstream