rs27124915 SNP Detail

Summary

• ID
  rs27124915
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43629618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATCTTTAA ATTGCTGCTG
  CACAGCTTAG GAACTTCTAC AATACCCATA AGTCCCTCTT CTTGCCTTGA CGTTTCAGAC
  TCTGTGTGAT ACCTGTTTGC TCTCTGCTTT AAGACACATA AACACTTCAG TTATAACTCA
  GATGCCTAAG CAAACTCAAC GTTGCCTCTA CTTCTCTTTT TCTTTCTCTG AATCTCAGCC
  Y
  TCGGGTTAAA CGCCTAAGTA GTTCCAGGTC CTGTATCACA CGTTGTCTTA TCAGAAATGT
  CACACTTCCC CACCTTGGTC TGTTCCCCTT TCCTCTCATT ACCATTAATT ATCAATGTCT
  ACACATGAAG CTCAAAACAC TGCCTCCTCT CCTTGGAGTC ACTGCTCCAC CAAGTTGCTT
  GTTTTGTGTC ATAGCAACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss37376641	NES08729551	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs27124915					SNP	C	T	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37376641	NES08729551	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43629618 () rs orientation: forward

Symbol	Name	Function Class
Gm39804	predicted gene, 39804	1091 bp downstream
Rr556296	regulatory region 556296	1385 bp distal
Rr556297	regulatory region 556297	within coordinates
Tssr17595	transcription start site region 17595	59 bp downstream
Tssr23873	transcription start site region 23873	926 bp upstream
Tssr23874	transcription start site region 23874	577 bp upstream