rs27124916 SNP Detail

Summary

• ID
  rs27124916
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43629507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCGCATGCT CTTATCTTTA AATTGCTGCT GCACAGCTTA
  GGAACTTCTA CAATACCCAT AAGTCCCTCT TCTTGCCTTG ACGTTTCAGA CTCTGTGTGA
  Y
  ACCTGTTTGC TCTCTGCTTT AAGACACATA AACACTTCAG TTATAACTCA GATGCCTAAG
  CAAACTCAAC GTTGCCTCTA CTTCTCTTTT TCTTTCTCTG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss37376642	NES08729550	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs27124916					SNP	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37376642	NES08729550	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43629507 () rs orientation: forward

Symbol	Name	Function Class
Gm39804	predicted gene, 39804	1202 bp downstream
Rr556296	regulatory region 556296	1274 bp distal
Rr556297	regulatory region 556297	within coordinates
Tssr17595	transcription start site region 17595	29 bp upstream
Tssr23873	transcription start site region 23873	815 bp upstream
Tssr23874	transcription start site region 23874	466 bp upstream